/******************************************************************************\

                     This file is part of the FAHViewer.

           The FAHViewer displays 3D views of Folding@home proteins.
                 Copyright (c) 2003-2013, Stanford University
                             All rights reserved.

    This program is free software; you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation; either version 2 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License along
    with this program; if not, write to the Free Software Foundation, Inc.,
    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

                For information regarding this software email:
                               Joseph Coffland
                        joseph@cauldrondevelopment.com

\******************************************************************************/

#ifndef FAH_PROTEIN_H
#define FAH_PROTEIN_H

#include "Topology.h"
#include "Positions.h"

#include <cbang/SmartPointer.h>


namespace FAH {
  class Protein {
    cb::SmartPointer<Topology> topology;
    cb::SmartPointer<Positions> positions;

    double radius;

  public:
    Protein(const cb::SmartPointer<Topology> &topology,
            const cb::SmartPointer<Positions> &positions) :
      topology(topology), positions(positions),
      radius(positions.isNull() ? 0 : positions->getRadius()) {}

    const cb::SmartPointer<Topology> &getTopology() const {return topology;}
    const cb::SmartPointer<Positions> &getPositions() const {return positions;}

    void setRadius(double radius) {this->radius = radius;}
    double getRadius() const {return radius;}
  };
}

#endif // FAH_PROTEIN_H

